rs108721547 SNP Detail

Summary

• ID
  rs108721547
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40155246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCCCGTGC CTCACCCGTG CCTTCCGTCG CGTGCGTCCC
  TCTCGCTCGC GTCCACGACT TTGGCCGCTC CCGCGACGCG GGCCTGCGCC GCGCGTGGTG
  C
  GTGCTGTGTG CTTCTCGGGC TGTGTGGTTG TGTCGCCTCG CCCCCCCTTC CCGCGGCAGC
  GTTCCCACGG CTGGCGAAGT CGCGGGAGTC CTCCTTCCC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385436	CHEV_17_39981300	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108721547					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40155246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	816 bp proximal
Rn18s-rs5	18s RNA, related sequence 5	1999 bp upstream
Tssr144602	transcription start site region 144602	1992 bp upstream
Tssr148051	transcription start site region 148051	1026 bp upstream
Tssr148052	transcription start site region 148052	812 bp upstream
Tssr148053	transcription start site region 148053	706 bp upstream
Tssr148054	transcription start site region 148054	194 bp upstream
Tssr148055	transcription start site region 148055	20 bp downstream
Tssr148056	transcription start site region 148056	362 bp downstream
Tssr148057	transcription start site region 148057	767 bp downstream
Tssr148058	transcription start site region 148058	1388 bp downstream
Tssr148059	transcription start site region 148059	1423 bp downstream
Tssr148060	transcription start site region 148060	1544 bp downstream
Tssr148061	transcription start site region 148061	1653 bp downstream