rs108722971 SNP Detail

Summary

• ID
  rs108722971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85924545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGAACTT TTATGCACCA
  GGAAAGTTGA GGCAACTGAG CTGTGTTTAC TGTCCAGAAG GACAATTACG TGGAAGCCTG
  GTGCCCGGAG GCTAAAAAAG GGAGGGGATA TAAGGGGGAG GGAGCAGTTG TTGTTGTTGT
  TTTTGTTGTT GTTGTTGTTG TTGTTCAAAG GAAAGTAATC GGAGTCCCTG AAGGGCTTCG
  R
  GGCCTCTCCG CCTGAGTACT GCGCTCCCCT GCGCCCTCCC TGGCGGTCTG CTCCAAGCTC
  CTTCGTTTGC AGCTTGCGGG GAGGCCCAGA CCACCCGCTA CCCAGCAATC TCTCTGTCTT
  CCAATGTCCT AGAGCCCGGA AGAGGCGTTG CCCCCAGGAC AAACCTTCCT GACCGTTTGG
  GTCGGCTGTT CCGGGTTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486767	CHEV_17_86016457	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108722971					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85924545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9589	CpG island 9589	1658 bp distal
Cpgi9590	CpG island 9590	332 bp distal
Cpgi9591	CpG island 9591	within coordinates
Cpgi9592	CpG island 9592	617 bp proximal
Gm54532	predicted gene, 54532	950 bp upstream
Gm55784	predicted gene, 55784	1835 bp downstream
Gm55785	predicted gene, 55785	144 bp downstream
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr5219	transcription start site region 5219	1236 bp downstream
Tssr5220	transcription start site region 5220	1446 bp downstream
Tssr149710	transcription start site region 149710	1965 bp upstream
Tssr149711	transcription start site region 149711	1941 bp upstream
Tssr149712	transcription start site region 149712	1655 bp upstream
Tssr149713	transcription start site region 149713	1246 bp downstream
Tssr149714	transcription start site region 149714	1261 bp downstream
Tssr149715	transcription start site region 149715	1296 bp downstream
Tssr149716	transcription start site region 149716	1378 bp downstream
Tssr149717	transcription start site region 149717	1431 bp downstream
Tssr149718	transcription start site region 149718	1455 bp downstream
Tssr149719	transcription start site region 149719	1465 bp downstream