rs108722988 SNP Detail

Summary

• ID
  rs108722988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85265016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAACTGC AGGGTCCGCA
  GACTCGGGGC TTGGCCATCT ACGAATACTA GCCAATCCCT TTTAGGATAC TTTTGCGCGT
  TCATTTAAAA AAAGCCGAAG TGACGGACTT GGAAATTGGT TTCTTGACGG ACAAGTAGAG
  GAAGCCAATA GTCGGAGGAT CAGGCCGCCA TTTGAACCAA TCAGAAAAGG ATATCGGTCT
  W
  CGAGTTGGGG CGTAATTTGA CTGACGGAGG ACTCTACCTA TGGCTACTAG GGTGGGCAGG
  TCGGTGACGT CAGGAGTTAG GGCAAGGCGG AGGTGGGGCT GAATAAAGTA AATGGTAATG
  AAGGGTTGGG CCTCACTGGT GGGCGGTGTG TGATGGATAG TTGACCTTGC CAATTAAGGT
  GGGCACTGAC GCCCAATGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss131339787	NCBIM37_NT_039649_chr17_85356928	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108722988					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131339787	NCBIM37_NT_039649_chr17_85356928	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85265016 () rs orientation: forward

Symbol	Name	Function Class
1110020A21Rik	RIKEN cDNA 1110020A21 gene	within coordinates
Cpgi9575	CpG island 9575	251 bp distal
Cpgi9576	CpG island 9576	62 bp proximal
Ppm1b	protein phosphatase 1B, magnesium dependent, beta isoform	within coordinates
Rr405500	regulatory region 405500	within coordinates
Tssr5218	transcription start site region 5218	643 bp upstream
Tssr146069	transcription start site region 146069	843 bp downstream
Tssr146070	transcription start site region 146070	450 bp downstream
Tssr146071	transcription start site region 146071	405 bp upstream
Tssr149699	transcription start site region 149699	899 bp downstream
Tssr149700	transcription start site region 149700	918 bp downstream
Tssr149701	transcription start site region 149701	948 bp downstream