rs108724650 SNP Detail

Summary

• ID
  rs108724650
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18997227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCACAA CCATCTGTAC
  AGCTACAGTG CACTCACATA CATTAAATAA ATAAATAAAT AAATAAATCT TTAAAAAGAA
  ATAGCACCTA GAGACTTTAC TTTGAACTGA GATGGCACCA GGGTCTGGGA CATGGCAGGC
  AACCCTGTAC CACTGACCTG CTGCCTTAGC CGCCTGTGGA CTTTGCTTTG CCCAAATACA
  S
  CTGTGGAGCC CAGAATGGCC CAGAACTCTC CATCCTCTTA CCTTCTCAAA GGCTCACATT
  ACAAGTAAAT GCCACCATGA CCAACACAGG GAACTCGGGG GAGGCTGGAC AGACAGACGT
  CTTGGTGTAG CAAGTGGTCG AGGAAACTTT GCAGAGAGGG GCTTTTCTAC TCGGCATACG
  CCAGGCATCG ACAGTTCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148471725	ENSMUSSNP2856994	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108724650					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18997227 () rs orientation: forward

Symbol	Name	Function Class
Tssr70882	transcription start site region 70882	1243 bp upstream
Tssr70883	transcription start site region 70883	1167 bp downstream
Tssr70884	transcription start site region 70884	1508 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates