rs108725609 SNP Detail

Summary

• ID
  rs108725609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCCCAA TTCAAAGCAT
  TCTAAGAGTC ACAGTTAGCA TCTCTGTTTT CATCAATGGA GACTGGCGTC TCTGAGCCAG
  TTGGATGCCC AGGTTTGTCT CTGAAGCCAG CGCTGCCTCA GCGGCTCTCA GACTCTCCCC
  TCTGTGTACT GGGGACACTT CCCCCCCATT CCACCTCTCC TGAGCCACAT GCCCTGCTTC
  R
  CCCTAACTGC AGATGGTGGC CACAAGAAGA ACCCCAAACC AGATCTCTTC TGGCCCCCAA
  ATTCAGGGCA AAAACCCTTG TCAGCCTTAA CCCTGGGGGA CCTGGGCTCT GACTCAGTCT
  CTGCGTGTAG AATCGGGTGT AAAGGGGGAA GCTCACTGCT AATCGGGGTC CCAGGGGCCT
  CTACAGTCTT AGGACCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736199	ENSMUSSNP5607879	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108725609					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152353 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	794 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	within coordinates
Rr603760	regulatory region 603760	261 bp proximal
Rr603761	regulatory region 603761	1252 bp proximal
Rr603762	regulatory region 603762	1762 bp proximal
Tssr40063	transcription start site region 40063	1033 bp downstream
Tssr40064	transcription start site region 40064	972 bp downstream
Tssr40065	transcription start site region 40065	945 bp downstream
Tssr40066	transcription start site region 40066	841 bp downstream
Tssr40067	transcription start site region 40067	787 bp downstream
Tssr40068	transcription start site region 40068	732 bp downstream
Tssr40069	transcription start site region 40069	605 bp downstream
Tssr40070	transcription start site region 40070	511 bp downstream
Tssr40071	transcription start site region 40071	494 bp downstream
Tssr40072	transcription start site region 40072	449 bp downstream
Tssr40073	transcription start site region 40073	424 bp downstream
Tssr40074	transcription start site region 40074	397 bp downstream
Tssr40075	transcription start site region 40075	373 bp downstream
Tssr40076	transcription start site region 40076	357 bp downstream
Tssr40077	transcription start site region 40077	337 bp downstream
Tssr40078	transcription start site region 40078	1367 bp upstream
Tssr44315	transcription start site region 44315	968 bp upstream
Tssr44316	transcription start site region 44316	870 bp upstream
Tssr44317	transcription start site region 44317	842 bp upstream
Tssr44318	transcription start site region 44318	442 bp upstream
Tssr44319	transcription start site region 44319	526 bp downstream