rs108727100 SNP Detail

Summary

• ID
  rs108727100
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144148995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAAGGAG TTAGCCATCA
  CAGCTGACCA TCTGAGTTTG GACACCTGAA CTCACATGGT GGAAGAACAT AAAGAATTGG
  TTCCCATTGG TCCTCTGACC TCCAAACTCA CACATGGCAT GCATAGGCAG ACATCCACAC
  ATATACCTTA TGTGCGCTAA ATAAATGTTG AGCGGGAACA TACTGGGGGG TGGGGGGAGA
  A
  GCACAAGGTG GTGTCAAGAG GACACTTGGC ATCATTGGCC TACCCCTTCC TATCACATGT
  GTACGATCAC ACATGCACAC ACACACACAC ACAGATGACT AGCTGTGTCA TTTTTTTTTT
  CATTTTGTTT TTTAAATGAA ACATTGCAGG CAGTGGTATT CTGTAATCCC AGTTAGAGTG
  TGAGAGCCAC CTGGGCTACC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147790738	ENSMUSSNP6616734	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108727100					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144148995 () rs orientation: forward

Symbol	Name	Function Class
Ovol2	ovo like zinc finger 2	Intron
Rr566440	regulatory region 566440	977 bp distal
Rr566441	regulatory region 566441	1163 bp proximal