rs108728954 SNP Detail

Summary

• ID
  rs108728954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52938065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTATAGC AAATATTTGA
  TTAAAATCTA ATTTATGAAA AAGCCACTCT CTGGCCCTTG TCCTGATCCC AGTGCTTGGC
  TGCTAGGGTT TACAACAACA CTGGAGGACA CCAATAAAGC TCTACTAAGG CCACAGAAGA
  CGTCTCATGA GTAGGCTAGG TACAGAAAAC ACAGAGGTCG GCACTTTAGA CGCCTCTCCA
  Y
  GTAGGTGAGA CAGAGGGATT ACAGGCCCAG GGGATTCTGA TATAGAAAGC AAGTGAGACT
  CACAAACAAT CTATTCTTAA CCCACACAAA ATCTTTTAGC GGCTATTTTT TAACAAGATA
  CTTTCCTTAG CGCTACAAAA GCCCTGCTCT GGGGTCCAGG CCAGTGACTG AGTTATCCTT
  AGGTGCATTT ATGACACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss133191941	ENSMUSSNP5788528	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108728954					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52938065 () rs orientation: forward

Symbol	Name	Function Class
Jazf1	JAZF zinc finger 1	within coordinates
Rr630519	regulatory region 630519	628 bp proximal
Tssr61049	transcription start site region 61049	643 bp downstream