rs108731457 SNP Detail

Summary

• ID
  rs108731457
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45859552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCAGTA AGAGGACAGC
  CTTTCAGGAG CTGTGCCTTT GGAAGCCGAG TGTATAGGTG CACCTGTGTG CCCGCCTGGT
  CATGTGCTTG TCCCAATGTG AGTACAACCG AAAGGGGCTA CCCACACGTC CATCCCCACT
  CTCCTCCTGC CTCCGTGCAA TATGCACGGT GTGCACCAGT GTGGATGCAA GGCTGGAACT
  G
  AGAGTTTCTA CTTCCCTTAG TTTCTTTGTC TCCTGGTTTC AAAAGACTAA AAGTAGGACC
  CTAGCAAGGT ACCGCACAGT ACTGACTCAG AAATTCTTAA GCTTAGTGCC CCCTAGGGGG
  AGCATCAGGC ATTAAGAGAG AGAGGTGAGC AGCAGCCCCC TTACACACAC ACACACACAC
  ACACACACAC ACACACACTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403380	CHEV_17_45685575	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108731457					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45859552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9191	CpG island 9191	1520 bp distal
Cpgi9192	CpG island 9192	within coordinates
Rr527421	regulatory region 527421	within coordinates
Rr527422	regulatory region 527422	560 bp distal
Rr527423	regulatory region 527423	203 bp proximal
Rr527424	regulatory region 527424	1041 bp proximal
Tmem151b	transmembrane protein 151B	within coordinates
Tssr148206	transcription start site region 148206	920 bp downstream
Tssr148207	transcription start site region 148207	1029 bp downstream
Tssr148208	transcription start site region 148208	1061 bp downstream