rs108732159 SNP Detail

Summary

• ID
  rs108732159
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84625519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCGGGTTCA GCTTTATAGC CTCCCCCCAC CAAAAAAAAA
  AAAAAAAACC AAAAAAACAA ATAAACTATA AGTCTAGGCA GTGGTAGCTT TGGCTCCAGA
  K
  ATTTGGGCCA GGTCGACCCC CTTTCCCATC TAGAGAAGCA ATCCTAGGCT TCATCTGTAG
  CTGGGGGGCT GAACCCAGCC TCTGGCTTCA CTCACTAAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss145367052	ENSMUSSNP6493478	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322746687	CHEV_8_86422789	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs108732159					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84625519 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	1215 bp upstream
Cpgi20661	CpG island 20661	1407 bp distal
Cpgi20662	CpG island 20662	495 bp proximal
Gm26721	predicted gene, 26721	within coordinates
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	1068 bp upstream
Tssr78301	transcription start site region 78301	1198 bp upstream
Tssr78302	transcription start site region 78302	1206 bp upstream
Tssr78303	transcription start site region 78303	1224 bp upstream
Tssr78304	transcription start site region 78304	1557 bp upstream
Tssr78305	transcription start site region 78305	1702 bp upstream
Tssr78306	transcription start site region 78306	1730 bp upstream
Tssr78307	transcription start site region 78307	1816 bp upstream