rs108736769 SNP Detail

Summary

• ID
  rs108736769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:166228479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGCACCAT GGGCTGGCTG AGCCACAGCC CTTGAACAAC
  AACAACAACA ACAACAACAA CAACAACAAC AACAACAACA AAAAAGCCAC CACCACCAAC
  Y
  CCACAACCCA AACAACAACC CAAACAAAAC AAAGCAAAAC TCAAGCCTAC AACAAAGCTT
  GTGTCAGCAT GACTACAGCA AAGATGAGCC TGTTTCATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146018933	ENSMUSSNP3461223	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108736769					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166228479 () rs orientation: forward

Symbol	Name	Function Class
Pogk	pogo transposable element with KRAB domain	Intron
Rr422579	regulatory region 422579	520 bp proximal
Rr422580	regulatory region 422580	1168 bp proximal