rs108738292 SNP Detail

Summary

• ID
  rs108738292
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22791625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGAATTT GTATAGACCA
  AAATTTAAAC TTCAGTGTGA GCAAATATCT TACTTCAATT TTCATGCAGC ATAAATGCAT
  AAGTGGGGAC CACATGGAGC AAATTTATGA AAGTAACTGA ATATATATAT ATATATATAT
  ATATATATAT ATATATATAT ATATATGTAT ATGTATATAT GTGTGTGTGT GTGTGTGTGT
  A
  TGTATGTGTG TGTGTGTGTG TATGTGTGTG TGTGTGTGTG TGTATTCAGT TACTATCAGT
  AGTCTCTATG GCCATTTACC TAAACACTTA GGATAAAGTA GTAGAAAATT TATAGGCATT
  CTTTTGATAA GATACATTGG CTCCTGTGAA ATGGAAACTG TCTAGGAGAG ATATTTATGG
  ACAGATAAAT ATTCAGATTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	FVB/NJ	I/LnJ	KK/HlJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss130661502	NCBIM37_NT_039649_chr17_22709611	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	FVB/NJ	I/LnJ	KK/HlJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs108738292					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130661502	NCBIM37_NT_039649_chr17_22709611	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22791625 () rs orientation: forward

Symbol	Name	Function Class
Rr392416	regulatory region 392416	446 bp upstream
Vmn2r111	vomeronasal 2, receptor 111	within coordinates