rs108738897 SNP Detail

Summary

• ID
  rs108738897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29819693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGGGGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGACTTAGAC TGCAGGCTGG AAAGCAATCT TGGGTGCCAC ATTTCTGGAG CTGTTCATCC
  Y
  GGGGTTTTGA GACAGGGTCT GTCACCGCAT CTTGGAGACT CAGCTAGGCT GGCTGGTTAG
  TGAAACACAG GGATATTCTT GTCTGCCCTT CCAGCACTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148665839	ENSMUSSNP1478994	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322131534	CHEV_7_30905287	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108738897					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29819693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18778	CpG island 18778	1249 bp proximal
Rr167448	regulatory region 167448	907 bp proximal
Rr380601	regulatory region 380601	1480 bp downstream
Tssr65657	transcription start site region 65657	1647 bp upstream
Zfp382	zinc finger protein 382	1674 bp upstream