rs108740628 SNP Detail

Summary

• ID
  rs108740628
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54599479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCAGTGGTGG CACATGCCTT TAATCCCAGT TTGGGAGGAA
  GAGGCAGAGG CAGGCGGATT TCTGAGTTCA AGGCCAGCCT GGTCTACAGA GTGAGTTCCA
  G
  GACAGCCAGG GTTACACAGA GAAACCCTGT CTCGGGAAAA AAAAAAAAAA ATCCTCAACC
  ATTCAACGTG CTTTGAAGTG CGGAATTACC ACCAAATATG A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135184754	ENSMUSSNP4631133	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108740628					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54599479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	291 bp proximal
Gm65558	predicted gene, 65558	within coordinates
Rr397672	regulatory region 397672	504 bp upstream
Rr576829	regulatory region 576829	within coordinates
Rr576830	regulatory region 576830	565 bp proximal
Rr576831	regulatory region 576831	1058 bp proximal
Supt20	SPT20 SAGA complex component	749 bp upstream
Tssr29131	transcription start site region 29131	717 bp upstream
Tssr29132	transcription start site region 29132	747 bp upstream
Tssr29133	transcription start site region 29133	791 bp upstream
Tssr29134	transcription start site region 29134	825 bp upstream
Tssr29135	transcription start site region 29135	976 bp upstream
Tssr29136	transcription start site region 29136	1001 bp upstream
Tssr29137	transcription start site region 29137	1030 bp upstream