rs108743338 SNP Detail

Summary

• ID
  rs108743338
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156313300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCCTGCATAG ACCTGGCCAG AAGGGCCTGC TCTGTATACA
  CCCGCACACT TGTATTCAGA CTGGAGGAGC CTAGACGTTG GAGTTCTATG GAGGCAGGGA
  A
  TCTCCAGTTG CCCCTCCCCT GCCAGGGTGC ACACATCCTG TTTCCACACG AGTCCCAGCT
  GTCTGAGTCA CTGGTGACTG TCGGGGGTGT GTTGCTCACT C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148128852	ENSMUSSNP438068	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108743338					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156313300 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	492 bp downstream
Mir7658	microRNA 7658	1216 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	301 bp upstream
Rr606703	regulatory region 606703	within coordinates
Rr606704	regulatory region 606704	270 bp distal
Tssr45022	transcription start site region 45022	305 bp upstream
Tssr45023	transcription start site region 45023	273 bp upstream
Tssr45024	transcription start site region 45024	34 bp upstream