rs108743452 SNP Detail

Summary

• ID
  rs108743452
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6157592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCCGGCG CCTGGCTGGC
  TGGTTCGCCT TTTGTTCGGG CGTGCGAGGA ACTGGGCCGA CCGAGGAGCT CGGGCGTGCG
  TGTGTAAAAT CAGAAGGCGT TTGGCTCGGA GCCGTGTTTT TTTTTTTTCC CCCTTCTCCT
  TAATTGTGCA GACAGAAAAA TCCCTTCTAC CGGTTTTCCC GGGGAGACGG GCTGCGCCGG
  S
  CCGGCCTCCC CCACAGTCCC TCCTTTGCTC TGTCGGCCTC CGGTCCCGGG GCGGTTCTCC
  TTTCCTTCCT GCCTTCCTTC CCTTTCCTAC TCTCCCCACC TTCAACCAAG CCGGGCCAGC
  CAGCCGGTGA GCGGGGTGTC TGCAAAGCGG CCCGGTCACC TGTCGTGGCA GCTGCATGGA
  GCCTGTGCGG TTTCCTCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397548404	MGP_WTSI_17_6107317	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108743452					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397548404	MGP_WTSI_17_6107317	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6157592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	within coordinates
Gm65964	predicted gene, 65964	947 bp upstream
Rr405018	regulatory region 405018	300 bp downstream
Tssr4988	transcription start site region 4988	26 bp downstream
Tssr142458	transcription start site region 142458	835 bp downstream
Tssr142459	transcription start site region 142459	754 bp downstream
Tssr142460	transcription start site region 142460	717 bp downstream
Tssr142461	transcription start site region 142461	700 bp downstream
Tssr142462	transcription start site region 142462	498 bp downstream
Tssr142463	transcription start site region 142463	479 bp downstream
Tssr142464	transcription start site region 142464	442 bp downstream
Tssr142465	transcription start site region 142465	410 bp downstream
Tssr142466	transcription start site region 142466	395 bp downstream
Tssr142467	transcription start site region 142467	155 bp downstream
Tssr146313	transcription start site region 146313	1010 bp upstream
Tssr146314	transcription start site region 146314	829 bp upstream
Tssr146315	transcription start site region 146315	778 bp upstream
Tulp4	TUB like protein 4	within coordinates