rs108743507 SNP Detail

Summary

• ID
  rs108743507
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48821640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGTCTT AGGCTACACA
  GTACATTTGA AGTTGGTCTG GGTTATGTGG GCGTGGTGGC GCACACCTTT AATCCCAGCA
  CTCAGGAGGC AGAGGCAGGT GGATTTCTGA GTTCGAGGCC AGTCTGGTCT ACATAGTGAG
  TTCCAGGACA GCCAGGGTGA TACAGAGAAA CCCTGTCTCA AAAAAACCAA AAAAAAAAAA
  W
  AAAAAAAAAG AGACCCTGTT TCAAGATGAA AAACAAACTC CCAAGTTGTC TATGCTCTGT
  TATATTCAAA CCATTGTAAT TTGAGAACAG GGGGAAAGAT TTCCTCTCTC CCTGAGAAAT
  ACCCCAGAAA GGTAAGATAA AGGTTTTGCC TTGTGTATGT GTTTGTATTC AATAAATATT
  ATTGAGCATC TGTCACCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146280792	ENSMUSSNP2869442	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108743507					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48821640 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	17 bp upstream