rs108744187 SNP Detail

Summary

• ID
  rs108744187
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172331676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGATGCTCT GATAGTTTAG AAACTCAGCG GGAGATGCTG
  GCGGGGGTGG GGTGGGGGGG TGGGGATGGG GTGGGGGGGG CGGGGGGATG GGGGGTGGGG
  K
  GGGGCATACT CACTGGGACT GAGGAGCTAG GGGAGGGTCC ATTTCCTTTT CTTTTCTGGC
  CTCATCTCCA TTGCTTGGTT TGTGACCCTG CTTGACACC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120014574	PARCsnp_1.09943	PARC_SEQ	INBRED	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108744187					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172331676 () rs orientation: forward

Symbol	Name	Function Class
Tagln2	transgelin 2	within coordinates
Tssr10218	transcription start site region 10218	1517 bp downstream
Tssr10219	transcription start site region 10219	1154 bp upstream
Tssr10220	transcription start site region 10220	1642 bp upstream
Tssr10221	transcription start site region 10221	1684 bp upstream
Tssr10222	transcription start site region 10222	1770 bp upstream