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rs108744188 SNP Detail
Summary
  • ID
    rs108744188
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr17:57531698 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCTGGTTCA GCAAGGTGAG
TGACTGGTAG GGGCACTAAG AGGTGGGATG GGCTCTGGAG TGATGATGGG GCGTGGTCGG
GGGGCGGGGG AGGGAGCAGG GAGAGGCTGC CATTCTAAGC TCTCATTCCA AGGGGTGAGA
AAGTACCACT ACGCGCGTGA GGGAGTGGGC CAGAGAAATC TTCTTATCGC CATCCTGGAC
M
CCAAAAATCA CGAAGGCTGT CCCGTCCACG TTTTTCCCGT ACAGGAACCT GAGAGACAAG
GAGACTTGGG GTCCTGGAGA CTTCTCTGGG TGTGGCTGAA GACACGCCCC CCATGCGTCA
ACGCCCCCCC CCCATGCGTC ACCCCCATCC TCACTTGGCT ATGATGGAAA CTTCCAGGCC
ATTTGGGTCA TCGATGTAAT                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss130940639 NCBIM37_NT_039649_chr17_57364121 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs108744188 SNP C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss130940639 NCBIM37_NT_039649_chr17_57364121 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:57531698 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
C3 complement component 3 within coordinates
Cpgi9399 CpG island 9399 within coordinates
Tssr145378 transcription start site region 145378 1563 bp downstream
Tssr145379 transcription start site region 145379 1488 bp downstream
Tssr145380 transcription start site region 145380 1443 bp downstream
Tssr145381 transcription start site region 145381 1389 bp downstream
Tssr145382 transcription start site region 145382 835 bp downstream
Tssr145383 transcription start site region 145383 758 bp downstream
Tssr145384 transcription start site region 145384 588 bp downstream
Tssr145385 transcription start site region 145385 551 bp upstream
Tssr145386 transcription start site region 145386 1327 bp upstream
Tssr145387 transcription start site region 145387 1558 bp upstream
Tssr148942 transcription start site region 148942 1852 bp upstream
Tssr148943 transcription start site region 148943 1812 bp upstream
Tssr148944 transcription start site region 148944 1798 bp upstream
Tssr148945 transcription start site region 148945 1761 bp upstream
Tssr148946 transcription start site region 148946 1749 bp upstream
Tssr148947 transcription start site region 148947 1499 bp upstream
Tssr148948 transcription start site region 148948 1415 bp upstream
Tssr148949 transcription start site region 148949 1359 bp upstream
Tssr148950 transcription start site region 148950 805 bp upstream
Tssr148951 transcription start site region 148951 776 bp upstream
Tssr148952 transcription start site region 148952 716 bp upstream
Tssr148953 transcription start site region 148953 535 bp upstream
Tssr148954 transcription start site region 148954 510 bp upstream
Tssr148955 transcription start site region 148955 365 bp upstream
Tssr148956 transcription start site region 148956 332 bp upstream
Tssr148957 transcription start site region 148957 182 bp downstream
Tssr148958 transcription start site region 148958 405 bp downstream
Tssr148959 transcription start site region 148959 565 bp downstream
Tssr148960 transcription start site region 148960 1319 bp downstream
Tssr148961 transcription start site region 148961 1356 bp downstream
Tssr148962 transcription start site region 148962 1502 bp downstream
Tssr148963 transcription start site region 148963 1554 bp downstream
Tssr148964 transcription start site region 148964 1587 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory