rs108747994 SNP Detail

Summary

• ID
  rs108747994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72721665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCAGAGG TTTATTAATT
  CTGGCAAGCA GCAGCACCAC CTAGAAAGAG TTAGGAACTC ACGTTCCACC CTCTCTCCCA
  GCAGCCCAGC ACTGGAGGCT GACCACATGT GTGAGGCCAG TCTGATTCAG TCTGTATAGT
  GAGTTCCAGG CCAGCCAGGA GCTGACTTAG TCAGAGCTTG CCTCAAAAAG TGTTGGAGTG
  R
  CGCTGAAGAA ATGGCTCCAT TGGTAAAGCG CCTGTTATGC AAGCAAGACT TTGGATCATA
  AGCACTCATG TAAAAAATAC ACTGGGTAAG GTGGGAGTTG ATGGATCCCC AGTGTTCACT
  GGCCAACCAT GCCAGCCAAC CAGTGAATTC AGTGATAGAC CCTACCTCGA ATGATAACGT
  GAAGAAGAAC GTTTGAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss133286998	ENSMUSSNP2432733	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs108747994					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72721665 () rs orientation: forward

Symbol	Name	Function Class
Gm31249	predicted gene, 31249	within coordinates
Gm67726	predicted gene, 67726	within coordinates
Rr632292	regulatory region 632292	1352 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	Intron
Tssr57163	transcription start site region 57163	624 bp downstream