rs108752477 SNP Detail

Summary

• ID
  rs108752477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29298928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG ATAGGATAGG GCTGGAGAGA
  Y
  AGCTCAGCGG TTAAGAGCAC TGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352857	CHEV_17_29216899	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108752477					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29298928 () rs orientation: forward

Symbol	Name	Function Class
Rr392491	regulatory region 392491	19 bp downstream
Rr524787	regulatory region 524787	974 bp distal
Rr524788	regulatory region 524788	413 bp distal
Rr524789	regulatory region 524789	693 bp proximal
Trp53cor1	tumor protein p53 pathway corepressor 1	828 bp upstream
Tssr143493	transcription start site region 143493	1622 bp upstream
Tssr147171	transcription start site region 147171	1113 bp upstream
Tssr147172	transcription start site region 147172	1010 bp upstream
Tssr147173	transcription start site region 147173	982 bp upstream
Tssr147174	transcription start site region 147174	960 bp upstream
Tssr147175	transcription start site region 147175	913 bp upstream
Tssr147176	transcription start site region 147176	879 bp upstream
Tssr147177	transcription start site region 147177	821 bp upstream
Tssr147178	transcription start site region 147178	868 bp downstream