rs108757423 SNP Detail

Summary

• ID
  rs108757423
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40157090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAGGTGT CGGAGAGCTG TCCCGGGGCA ACGCTCGGGT
  TGGCTTTGCC GCGTGCGTGT GCTCGCGGAC GGGTTTTGTC GGACCCCGAC AGGGTCGGTC
  C
  GGCCGCATGC ACTCTCCCGT TCCGCGCGAG CGCCCGCCCG GCTCACCCCC GGTTTGTCCT
  CCCGCGAGGC TCTCCGCCGC CGCCTCCTCC TCTCTCGCG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385451	CHEV_17_39983144	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108757423					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40157090 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	1466 bp downstream
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	155 bp upstream
Rr331228	regulatory region 331228	1490 bp distal
Rr331229	regulatory region 331229	within coordinates
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	148 bp upstream
Tssr144603	transcription start site region 144603	253 bp upstream
Tssr144604	transcription start site region 144604	311 bp upstream
Tssr144605	transcription start site region 144605	361 bp upstream
Tssr144606	transcription start site region 144606	419 bp upstream
Tssr144607	transcription start site region 144607	528 bp upstream
Tssr144608	transcription start site region 144608	675 bp upstream
Tssr144609	transcription start site region 144609	819 bp upstream
Tssr144610	transcription start site region 144610	978 bp upstream
Tssr144611	transcription start site region 144611	1115 bp upstream
Tssr144612	transcription start site region 144612	1244 bp upstream
Tssr144613	transcription start site region 144613	1363 bp upstream
Tssr144614	transcription start site region 144614	1395 bp upstream
Tssr144615	transcription start site region 144615	1482 bp upstream
Tssr144616	transcription start site region 144616	1517 bp upstream
Tssr144617	transcription start site region 144617	1590 bp upstream
Tssr144618	transcription start site region 144618	1620 bp upstream
Tssr144619	transcription start site region 144619	1642 bp upstream
Tssr144620	transcription start site region 144620	1691 bp upstream
Tssr144621	transcription start site region 144621	1796 bp upstream
Tssr144622	transcription start site region 144622	1815 bp upstream
Tssr144623	transcription start site region 144623	1854 bp upstream
Tssr144624	transcription start site region 144624	1951 bp upstream
Tssr144625	transcription start site region 144625	1993 bp upstream
Tssr148055	transcription start site region 148055	1789 bp upstream
Tssr148056	transcription start site region 148056	1441 bp upstream
Tssr148057	transcription start site region 148057	1049 bp upstream
Tssr148058	transcription start site region 148058	444 bp upstream
Tssr148059	transcription start site region 148059	412 bp upstream
Tssr148060	transcription start site region 148060	260 bp upstream
Tssr148061	transcription start site region 148061	175 bp upstream
Tssr148062	transcription start site region 148062	324 bp downstream
Tssr148063	transcription start site region 148063	455 bp downstream
Tssr148064	transcription start site region 148064	697 bp downstream
Tssr148065	transcription start site region 148065	1559 bp downstream
Tssr148066	transcription start site region 148066	1635 bp downstream
Tssr148067	transcription start site region 148067	1716 bp downstream
Tssr148068	transcription start site region 148068	1832 bp downstream