rs108757435 SNP Detail

Summary

• ID
  rs108757435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10362885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGCTGACAAG TCTGAAGATC CGACTTCAAT TCTCAGATCT
  CAAATAGTGG AAGGCGAGAA CTTGCTTTCC AAAGTTTTAC AGACTCTAAG TGCGTGTGTG
  Y
  GTGTGTGTGT GTGTGTGCGC GCGCGCGCGC GCGCACGCGC ACGTAATACT TTTTAAGAGA
  ACTAAACCTT GCCAAATTGC CAAGGGTGGT CTCCAATTTT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147845426	ENSMUSSNP1487485	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108757435					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10362885 () rs orientation: forward

Symbol	Name	Function Class
Clec16a	C-type lectin domain family 16, member A	318 bp upstream
Cpgi7953	CpG island 7953	1725 bp distal
Cpgi7954	CpG island 7954	within coordinates
Dexi	dexamethasone-induced transcript	1967 bp upstream
Rr404676	regulatory region 404676	1719 bp downstream
Rr404677	regulatory region 404677	110 bp upstream
Rr511518	regulatory region 511518	1477 bp distal
Rr511519	regulatory region 511519	within coordinates
Tssr137042	transcription start site region 137042	319 bp upstream
Tssr137043	transcription start site region 137043	337 bp upstream
Tssr137044	transcription start site region 137044	369 bp upstream
Tssr137045	transcription start site region 137045	407 bp upstream
Tssr139926	transcription start site region 139926	1925 bp upstream