rs108758684 SNP Detail

Summary

• ID
  rs108758684
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113282219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC AACAACCACA TGAAGGTTCA
  K
  GTGTACAGCT ACTGTGTACT CATCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133564244	ENSMUSSNP3484133	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss321910475	CHEV_6_113255252	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108758684					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113282219 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	1879 bp upstream
Cpgi17838	CpG island 17838	1058 bp proximal
Cpne9	copine family member IX	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	367 bp downstream
Gm67816	predicted gene, 67816	363 bp downstream
Rr399829	regulatory region 399829	1114 bp upstream
Rr636483	regulatory region 636483	277 bp proximal
Rr636484	regulatory region 636484	1389 bp proximal
Tssr58189	transcription start site region 58189	1692 bp upstream
Tssr58190	transcription start site region 58190	1902 bp upstream
Tssr58191	transcription start site region 58191	1981 bp upstream