rs108762283 SNP Detail

Summary

• ID
  rs108762283
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40156141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGAGGGCAAA GGGAAAGAGG CTAGCAGTGG TCATTGTCCC
  GACGGTGTGG TGGTCTGTTG GCCGAGGTGA GTCTTGGGGG CTCGTCCGGC CCTGTCGTCC
  G
  TCGGGAAGGC GCGTGTTGGG GCCTGCCGGA GTGCCGAGGT GGGTACCCTG GCGGTGGGAT
  TAACCCCGCG CGCGTGTCCC GGTGTGGCGG TGGGGGCTC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385445	CHEV_17_39982195	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108762283					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40156141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	1104 bp upstream
Rr331227	regulatory region 331227	1541 bp distal
Rr331228	regulatory region 331228	541 bp distal
Rr331229	regulatory region 331229	within coordinates
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	1097 bp upstream
Tssr144603	transcription start site region 144603	1202 bp upstream
Tssr144604	transcription start site region 144604	1260 bp upstream
Tssr144605	transcription start site region 144605	1310 bp upstream
Tssr144606	transcription start site region 144606	1368 bp upstream
Tssr144607	transcription start site region 144607	1477 bp upstream
Tssr144608	transcription start site region 144608	1624 bp upstream
Tssr144609	transcription start site region 144609	1768 bp upstream
Tssr144610	transcription start site region 144610	1927 bp upstream
Tssr148051	transcription start site region 148051	1921 bp upstream
Tssr148052	transcription start site region 148052	1707 bp upstream
Tssr148053	transcription start site region 148053	1601 bp upstream
Tssr148054	transcription start site region 148054	1089 bp upstream
Tssr148055	transcription start site region 148055	840 bp upstream
Tssr148056	transcription start site region 148056	492 bp upstream
Tssr148057	transcription start site region 148057	100 bp upstream
Tssr148058	transcription start site region 148058	493 bp downstream
Tssr148059	transcription start site region 148059	528 bp downstream
Tssr148060	transcription start site region 148060	649 bp downstream
Tssr148061	transcription start site region 148061	758 bp downstream
Tssr148062	transcription start site region 148062	1273 bp downstream
Tssr148063	transcription start site region 148063	1404 bp downstream
Tssr148064	transcription start site region 148064	1646 bp downstream