rs108764078 SNP Detail

Summary

• ID
  rs108764078
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171285693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGTTTTGA CTTTCTAAGA GTAACATCTG AGCATGACAG
  TGGCGGCGCA CACATTTAAA TTGGACACAT GGGAGGCAGA GGGGGGTGGG TTTCTGCATC
  S
  GGGGCCAGCC TAGTCTACAG AGCGAGTTTC AGGGCAGCCT CAGCTAAACA GAGCAACCCT
  GACTCGAAAA AACATAACAC AGTACAACAC AACAAACAAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss119999057	PARCsnp_1.13606	PARC_SEQ	INBRED	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108764078					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171285693 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	177 bp distal
Rr31965	regulatory region 31965	1509 bp proximal
Tssr10057	transcription start site region 10057	6 bp downstream
Tssr10058	transcription start site region 10058	208 bp upstream