rs108767760 SNP Detail

Summary

• ID
  rs108767760
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGGTTG CTGGGACTTG
  AACTCAGGAC CTTCGGAAGA GCAATCAATG CTCTTAACCA CCGAGCCATC TCTCCAGCCC
  GGCAAGATCT CTCTTGTTCA CTGTTATATA TGTCAGGCAA GCAGTCTCAA ACTTCTATAG
  AGTCTCCTGT GTGTGCCTCC ATCCTGCTGT AAGAACGCTG GGATTACAGA TATGTACCAT
  M
  GCACCTCATG CTTATGTGGT TAAGAGCTCT ACCCTTTGAG TCATCTCCCC TCATTCATCA
  AATGCCACTT GAACTACATG TCCTCTGGAG GTGCTCCTGA CTCCTAATTC TTACTCTTTG
  CTGGATTTCC AGTAACTAAC ATCTATTTTG TACCTCTTAT CCTCATCCTT GAATCATGTT
  GGTGTTAATG AAACACTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147623004	ENSMUSSNP5160476	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320509804	CHEV_2_132639974	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108767760					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	1388 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1903 bp upstream
Rr397334	regulatory region 397334	1700 bp upstream
Rr565537	regulatory region 565537	1806 bp proximal
Rr565538	regulatory region 565538	1914 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1899 bp upstream
Tssr20336	transcription start site region 20336	1910 bp upstream
Tssr20337	transcription start site region 20337	1931 bp upstream
Tssr26490	transcription start site region 26490	1740 bp downstream