rs108777002 SNP Detail

Summary

• ID
  rs108777002
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33120139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGCGTTT GGATGCTGAT
  TATGGGGTGG ATCCCTGGAT ATGGCAGTCT CTACATGGTC CATCCTTTCA TCTCAGCTCC
  AAACTTTGTC TTTGTAACTC CTTCCATGGG TGTTTTGTTC CCAATTCTAA GGAGGGGCAT
  AGTGTCCACA CTTCAGTCTT CATTCTTCTT GAGTTTCATG TGTTTAGCAA ATTGTATCTT
  A
  TAACTTTTTT ATTTTTTATT TGGCTTCTGT AACTTGATTG TGCAGGGTCC CAAAGATCAG
  CTTGGCCGAA CAGACCCAGT TTTGCTTGCT TGTGATATCT AAGGCCTTGT TGTGGTTTTC
  CTTTTAAAAA ACTCTTTCCC ACACCCATTC TTCACAACAA GGCTGAGATT TGACTTTAAG
  GCTGTTGTCC TGCTAGCATC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
ss130772247	NCBIM37_NT_039649_chr17_33038110	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
rs108777002					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130772247	NCBIM37_NT_039649_chr17_33038110	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33120139 () rs orientation: forward

Symbol	Name	Function Class
Rr392536	regulatory region 392536	76 bp upstream
Tssr143746	transcription start site region 143746	1264 bp upstream