rs108779890 SNP Detail

Summary

• ID
  rs108779890
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24658924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG TGGTAAGGTC CTGAATCTTA
  T
  ATTAGATTTT ATGCAATCCA GATAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325331702	CHEV_17_24576895	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108779890					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24658924 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	130 bp downstream
Eci1	enoyl-Coenzyme A delta isomerase 1	634 bp downstream
Rr329768	regulatory region 329768	324 bp distal
Rr329769	regulatory region 329769	1077 bp proximal
Rr337043	regulatory region 337043	21 bp distal
Rr340710	regulatory region 340710	277 bp proximal
Tssr146730	transcription start site region 146730	445 bp downstream