rs108784392 SNP Detail

Summary

• ID
  rs108784392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146699168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTCCCACT TAAGAAAAAA AAAATTAACC
  ATTTAggcgt atgttggtgg tggtctatgc tgaagagaca gaaataggag gaccacaggt
  tcaaggccag cctgggatac aagccagcca gggcagcata gtgagaacct atctcCAaca
  Y
  acacacacac acacacacac acacacacac acacacacac acCTTTATTT TTCCTACAGA
  GCTTTTCTTT TCTCAATACT TTCTAATGTT TGCACCTTCA GTGTGCTTAG TGAGATCTCA
  GAGAGAATAC AATAGAGAGA GAGAGAATGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147874145	ENSMUSSNP2092457	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320546299	CHEV_2_146682984	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs108784392					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146699168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12373	CpG island 12373	974 bp distal
D2Dcr102	DNA Segment, Chr 2, Derry C. Roopenian 102	within coordinates
Kiz	kizuna centrosomal protein	within coordinates
Rr397370	regulatory region 397370	566 bp downstream
Rr566738	regulatory region 566738	1374 bp distal
Rr566739	regulatory region 566739	1403 bp distal
Tssr20613	transcription start site region 20613	1423 bp downstream
Tssr20614	transcription start site region 20614	1322 bp downstream