rs108789053 SNP Detail

Summary

• ID
  rs108789053
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172038869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTTTGCC TCTGACCTTT GATGATCACC CTTCCCCCTC
  AGTTTGGAGA TTTGTATTTG TCCCTTATTG AAATCTCATA CACTCCATGG TCTCCATCGT
  W
  AACGCTACTC CCAGTCCCTC AAGCAGAAAG CGCTACTTTG CTGCCGTTTT ATTTACTATA
  AAATTTACCA AAGCCCGCCT TATAATTAAT GAAATACTTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120007457	PARCsnp_1.17807	PARC_SEQ	INBRED	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108789053					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172038869 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	957 bp downstream
Tssr15168	transcription start site region 15168	1176 bp upstream
Tssr15169	transcription start site region 15169	1098 bp upstream
Tssr15170	transcription start site region 15170	1076 bp upstream
Tssr15171	transcription start site region 15171	1058 bp upstream
Tssr15172	transcription start site region 15172	977 bp upstream
Tssr15173	transcription start site region 15173	883 bp upstream
Tssr15174	transcription start site region 15174	829 bp upstream
Tssr15175	transcription start site region 15175	681 bp downstream
Tssr15176	transcription start site region 15176	1762 bp downstream
Tssr15177	transcription start site region 15177	1816 bp downstream
Tssr15178	transcription start site region 15178	1840 bp downstream
Tssr15179	transcription start site region 15179	1862 bp downstream