rs108789216 SNP Detail

Summary

• ID
  rs108789216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125220820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATTTAG ATCTCATTTT
  GAATTTTCGA ACAAAAAATA AATTCTGAAG GAAAATACAT GAATGTTTTT TGTTTGTTTG
  TTTTTTGAGA CAGGGTTTCT CTGAATAGCC CTGGCTGTCT TGGAACTCAC TTTGTAGACC
  AGGCTGGCCT TGAACTCAGA AATCCACCTG CCTCTGCCTC CCGAGTGCTG GGATTAAAGG
  Y
  GTGCACCACT ATTCCCGGCC AGGAAAATAC ATCAATATTA ATACAATCTC AGCCCTCTGG
  ACCCCAGACA TATGGAGGTA CAAATGGGAC CTTAATGACA AATGGGACCT TATTAACAAC
  ACATGTGTTT GTGGATCCTC TTTACCTTTG TCACACGAGT CATCAGGTCA AGATCTTGTA
  TGGGTGGTAA ACTGGGTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135808301	ENSMUSSNP1202421	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320936351	CHEV_3_125130089	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs108789216					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125220820 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	973 bp distal