rs108789240 SNP Detail

Summary

• ID
  rs108789240
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:115349496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTACACC TAAGCATTTC
  ACAATTTACA TATGCCTTAA AAACGTTCAA TCCTGTCTTT TGAATACACT TTAAAGGTTT
  AAACAAAGAC AGGAGACTTT TGAACATATG GGAAAATGAC ACAATGGGTA TCAGAAATTT
  ATCTTTATTA ATATTTTACA ATTCTTTTTT TGAATTATTG AAAATAGATG GCTTAGTGCA
  W
  TATATTCTGA TTACGAGTTT CCATTCCCTA ACACCTTCAC AATCTTCTCT CATCTCTACT
  CTGTTACTTA ATAAACTTAG AAAACAGAAT CTAAAAATAA TACAAAAGAA AAGCAAACAA
  ATGGGAATAC ACATACACAC TCACTCACAC ACAGAAAGAG ACATAGTGAG AGACAGAGAC
  AGAGAACAAA GAACAGAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324189778	CHEV_12_116624087	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108789240					SNP	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss138829407	ENSMUSSNP4897726	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:115349496 () rs orientation: forward

Symbol	Name	Function Class
Gm19331	predicted gene, 19331	970 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-62-1	immunoglobulin heavy variable 1-62-1	831 bp downstream