rs108789858 SNP Detail

Summary

• ID
  rs108789858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28395593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTCTCG GGGCGTTGTC
  CCTCAGGGGT CGACCATCAG AGTGTCATTT CTCAGGGAAG GCAGTAGAAG GAAGCAAGTG
  TTGTCAGGGA ACCTTCCTTC AGAGAGAATC ATCCCTCAGG AAGATGAGTC GAGCAGAGGG
  GAACGTCAGG GCCCTTCCTC AGGGGACAGG ATGGGTGCAC CATCCCTCAT AAACACTCAC
  R
  TTCCCCAGGG CATATGGGAA AAGCCAGTAC TGCAGGGAGA ATTGTCCCGC AGGAAGGACT
  GTCAGGGCTC CATCCTTCAT AATGCTGTCC CCCCACCCCC ACCCCTCGGG CATCTTCCCA
  CAAAGTGCAG GAAGGATTGT CCCTCGGGGT GCAGTCCATG CAGAAGGACC ATCTCTCACG
  GAGACTGTCC ACAGGGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352118	CHEV_17_28313564	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108789858					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28395593 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	within coordinates
Cpgi8870	CpG island 8870	within coordinates
Rr339474	regulatory region 339474	within coordinates
Scube3	signal peptide, CUB domain, EGF-like 3	1765 bp downstream
Tssr143392	transcription start site region 143392	511 bp upstream
Tssr143393	transcription start site region 143393	777 bp upstream
Tssr147097	transcription start site region 147097	1022 bp downstream
Zfp523	zinc finger protein 523	543 bp upstream