rs108790778 SNP Detail

Summary

• ID
  rs108790778
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27799512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCCATT TTAAGTTGAT
  TTTTTTTACA AGGTAGTGTG GGGTGTGCGT GTGTGTGTGT GTGTGTGTGT GTGTGTGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGG TTTCTGTTTT
  CTATAAGGGG AAAGATGAGA AAAAAGGAAG CTTTGACCAA AGACAGGAAA TTTTTTTTTA
  W
  AAAAAATGGA GGGAGAAGGA AAAAAGGGAT TAAAAAATAA GGGTTAAGGC TGGAGAGATG
  GCTCAGTGGA GAGATGGCTC AGATGGCACT GGCTGTTGGC TGTTCTTTCA GAGGACCTGT
  GTTCAGTTCC CAGCACCCAC ATGGTGGCTG TGGAGAGACA GAGACAATGA CAGACAGACA
  GAGTTTGTGT CTGTTCACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148631750	ENSMUSSNP3303977	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss322125337	CHEV_7_28885106	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108790778					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27799512 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	within coordinates
Gm10935	predicted gene 10935	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Rr155708	regulatory region 155708	489 bp proximal
Rr170288	regulatory region 170288	403 bp proximal
Tssr65362	transcription start site region 65362	1167 bp upstream
Tssr65363	transcription start site region 65363	1208 bp upstream