rs108792650 SNP Detail

Summary

• ID
  rs108792650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTGAGGA CTCCAGCCAC
  AAAGATGGTC ACTGTCTGCC ATGTGGGGGT CCCGAAGTAG GAGAGGAGGC CTTCCTGAGA
  ACAGAGAGAT GGGTGTGACT TCAATACCAA ATTGCAGGGG GAAGAAAGAG ATTTCCCATG
  AAGGGATGCT AAGGCGCTCC TGGGCTTATA ACCCCAGCAC TCAGGAACCC TAGGAAGGAG
  R
  GCTGTAAGCC TAATGCCAAC CTGTGAAGTT TATTGAGATC CTCACTCAGA AAACAAAACT
  TAGGGCCAGC AAGATAGCTC ATGCACAAAA GGACACACAC GCGCGCGCGC GTGCGCGCAA
  ATGTAAAAAG TATCCCACTC AACCCACGAT CCCAAAATGG GAAAACAAAA CAAAATGAAA
  ACAAAACAAA ACAAAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149135521	ENSMUSSNP6907580	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108792650					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111517 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Cpgi19061	CpG island 19061	1959 bp distal
Gm10252	predicted gene 10252	1793 bp downstream
Gm73429	predicted gene, 73429	630 bp upstream
Gm73431	predicted gene, 73431	443 bp downstream
Rr380754	regulatory region 380754	661 bp downstream
Rr646450	regulatory region 646450	1719 bp distal
Rr646451	regulatory region 646451	1984 bp distal
Rr646452	regulatory region 646452	1074 bp distal
Rr646453	regulatory region 646453	641 bp distal
Rr646454	regulatory region 646454	144 bp distal
Rr646455	regulatory region 646455	946 bp proximal
Tssr66542	transcription start site region 66542	993 bp downstream
Tssr72399	transcription start site region 72399	1147 bp upstream
Tssr72400	transcription start site region 72400	1116 bp upstream