rs108795488 SNP Detail

Summary

• ID
  rs108795488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72887299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGGCTT CACGTAGTTT
  TTTATTAGGA CTTTGTGGTC TTGTGTTTCT GGATGGCTGG GGTGGGGCTA AGACGCCTTG
  ACTTTTAGAA CATGCTGGTA CTTGTCCCCC TGGTCTCAGA CTGACCACAC AACCCTTCCC
  TGGAGAGACA TTTGTCAGCT AGGCTGAGAC TGGGAACTAG GGGCTGCTTT GAGTGTTTGT
  R
  TGCACACAGT TGGCTCTATG AGAGTGATTC TCAATGGCAG GTGGCTGCCT GCCTTGCAGT
  CCCTTGCCAG CTGTGCCCCA GCCCAGGGAT CTTGTGGTAG TAGTTTTTTA AACCTCAACT
  AGTCTGCCAT GATCGGACCA TAAAGGAAGG ACTTAAACTT GGGGTTAGTG GAGAGTGAGC
  ACGATATTTT CTGATGGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144663605	ENSMUSSNP3443527	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108795488					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72887299 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	939 bp upstream
Tssr7322	transcription start site region 7322	968 bp upstream
Tssr7323	transcription start site region 7323	1011 bp upstream
Tssr7324	transcription start site region 7324	1060 bp upstream
Tssr7325	transcription start site region 7325	1075 bp upstream
Tssr7326	transcription start site region 7326	1105 bp upstream
Tssr7327	transcription start site region 7327	1134 bp upstream
Tssr7328	transcription start site region 7328	1437 bp upstream
Tssr7329	transcription start site region 7329	1472 bp upstream
Tssr7330	transcription start site region 7330	1486 bp upstream
Tssr12178	transcription start site region 12178	975 bp downstream
Tssr12179	transcription start site region 12179	1018 bp downstream
Tssr12180	transcription start site region 12180	1082 bp downstream
Tssr12181	transcription start site region 12181	1103 bp downstream
Tssr12182	transcription start site region 12182	1146 bp downstream
Tssr12183	transcription start site region 12183	1167 bp downstream