rs108796890 SNP Detail

Summary

• ID
  rs108796890
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:33422947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGTTACATCC TCCCCCATCA CATAAAGAAA ATATCACACA
  CATACACACA CACACACACA CACACACACA CACACACACA TACACACAGA CAGACAGACA
  C
  ACACACACAC ACACAAACAC ACACACACAC ACACAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGTCAA ACAGCATTTA ATTCCTGTGT AGCAACAAGG A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss134155237	ENSMUSSNP3395031	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108796890					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:33422947 () rs orientation: forward

Symbol	Name	Function Class
Gm21870	predicted gene, 21870	166 bp downstream
Gm61620	predicted gene, 61620	64 bp downstream
Gm61788	predicted gene, 61788	within coordinates