rs108797244 SNP Detail

Summary

• ID
  rs108797244
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30163927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTGTTT GGGTCTTGTT
  GTTGTTGTTT TGTTTTTCTT TTCTTTTTTG GTTTTATTGA GACAGGGTTT CTCTGTGTAG
  CTCTGGCTGT CCTGGAACTC ACTCTGTAGA CCAGGCTGGC CTCGAACTCA GAAATCCGCC
  TGCCTCTGCC TCCCGAGTGC TGGGATCAAA GGCGTGCACC ATCACAACCC AGCCTGTTTT
  K
  TTTCAGAGGC AGGGTCTTAC TATGTAGCCT AGGATGGCTT GGAACTTCTT GTGTAGGTCT
  TGAACCTATG GCAGTCAGCC TCTGCTGCCT TGGAAATCCT GGGACCATGG TTCCATTTAA
  TCCTTTGATT TTCCATTTGA CCACAAAAAT GTTCTCACAA AACCTGCATC TTGCCACATC
  TTCCCAGATT GTTGGGGCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133095072	ENSMUSSNP3161735	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321776173	CHEV_6_30113928	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs108797244					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30163927 () rs orientation: forward

Symbol	Name	Function Class
Mir182	microRNA 182	1990 bp downstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	1990 bp proximal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Rr627708	regulatory region 627708	1410 bp distal