rs108797900 SNP Detail

Summary

• ID
  rs108797900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTGAAA CTCACTCTGT
  AGACCAGGCT GGCCTCGAAC TCAGAAATCC GCCTGCCTCT GCCTCCCAAG TGCTGGGATT
  CCACCACCCC CGGCTTGAAT TCTGCTTTTG AGTCTCAAGG AAACAAGAGT GGCTATTAAG
  AAAGACTAGA GCCTTAGAGT TACCGGCCGC AGCTGTGATC CCTCACGGTT GCACTGTTGC
  R
  AAACCAAATC AAAAAAGTCT TTTATTTAAA AGTACTAAGG GGTTTTGCAC ACCACGTACG
  TTCCCAGTTC AGACCTTGAG CAGGGACTAC ATCGAAAGCA CAGAATCTCC AAGGCCCATC
  TTCCCGTCGG CTCACTTCAC TGTGGTGATC AAGTTCATGG TGGTTTGATA TGTTTGTATT
  AAAGCGAATA ATGCACCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss147477621	ENSMUSSNP4198654	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321335970	CHEV_4_132288890	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs108797900					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	342 bp distal
Cpgi14970	CpG island 14970	482 bp proximal
Rr398540	regulatory region 398540	118 bp downstream
Rr601049	regulatory region 601049	520 bp distal
Rr601050	regulatory region 601050	435 bp distal
Rr601051	regulatory region 601051	28 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr39417	transcription start site region 39417	1132 bp downstream
Tssr43695	transcription start site region 43695	1254 bp upstream
Tssr43696	transcription start site region 43696	537 bp upstream
Tssr43697	transcription start site region 43697	417 bp upstream
Tssr43698	transcription start site region 43698	389 bp upstream
Tssr43699	transcription start site region 43699	1850 bp downstream
Tssr43700	transcription start site region 43700	1862 bp downstream
Xkr8	X-linked Kx blood group related 8	429 bp upstream