rs108798048 SNP Detail

Summary

• ID
  rs108798048
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128516464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACACTCATT CACATGAAAC AAACAAACAA AAAAAAGTAT
  TTATATAAAT TAAGTCAAAC CTCACAAAAA CTAGAGGAAC ATAAACTCCC AACAGTCAAT
  T
  AAAAAAAAAA ACTGTACAAG ACTGGTCAGT CTCTTATATC TGGAAAATGT GTAACATAAA
  AAAGTTCTTT ATCATATATA TATATATATA TATTATATA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145462194	ENSMUSSNP876548	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108798048					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128516464 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr12058	regulatory region 12058	864 bp distal
Rr28453	regulatory region 28453	136 bp proximal
Tssr195	transcription start site region 195	1786 bp upstream
Tssr13461	transcription start site region 13461	265 bp upstream
Tssr13462	transcription start site region 13462	95 bp upstream
Tssr13463	transcription start site region 13463	within coordinates
Tssr13464	transcription start site region 13464	30 bp downstream
Tssr13465	transcription start site region 13465	48 bp downstream
Tssr13466	transcription start site region 13466	113 bp downstream
Tssr13467	transcription start site region 13467	160 bp downstream
Tssr13468	transcription start site region 13468	249 bp downstream
Tssr13469	transcription start site region 13469	302 bp downstream
Tssr13470	transcription start site region 13470	397 bp downstream
Tssr13471	transcription start site region 13471	466 bp downstream
Tssr13472	transcription start site region 13472	535 bp downstream
Tssr13473	transcription start site region 13473	548 bp downstream
Tssr13474	transcription start site region 13474	604 bp downstream
Tssr13475	transcription start site region 13475	628 bp downstream
Tssr13476	transcription start site region 13476	645 bp downstream
Tssr13477	transcription start site region 13477	706 bp downstream