rs108799519 SNP Detail

Summary

• ID
  rs108799519
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84625450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CGCTCCCCTG AACCCACACC CCAACCCCCG CACTGAGTTG
  TCTATATTGC TTAAGTGCCT GGTTTTGGCC CCGGGTTCAG CTTTATAGCC TCCCCCCACC
  C
  AAAAAAAAAA AAAAAACCAA AAAAACAAAT AAACTATAAG TCTAGGCAGT GGTAGCTTTG
  GCTCCAGATA TTTGGGCCAG GTCGACCCCC TTTCCCATCT A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145367047	ENSMUSSNP3374292	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108799519					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84625450 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	1284 bp upstream
Cpgi20661	CpG island 20661	1338 bp distal
Cpgi20662	CpG island 20662	564 bp proximal
Gm26721	predicted gene, 26721	within coordinates
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	1137 bp upstream
Tssr78301	transcription start site region 78301	1267 bp upstream
Tssr78302	transcription start site region 78302	1275 bp upstream
Tssr78303	transcription start site region 78303	1293 bp upstream
Tssr78304	transcription start site region 78304	1626 bp upstream
Tssr78305	transcription start site region 78305	1771 bp upstream
Tssr78306	transcription start site region 78306	1799 bp upstream
Tssr78307	transcription start site region 78307	1885 bp upstream