rs108799838 SNP Detail

Summary

• ID
  rs108799838
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57531219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTGACG GAAGATGGAA
  GTTGGGATTA GCCCTGGCTC TTACCATGAG GTCAAAGGGC ATGGCTGGCT TGAAGAATTT
  GGGTGTCTTG GTGAAGTGGA TCTGGTACGG GGAAGTGACA ATCGGGATCC CACTGCGCTC
  TGCCTCTACC ATGTCACTAC CTGAGGAAAC GGATGGAAGC AGTGAAGGCA GGCTTCCCAA
  M
  AGCCCTTCAG AGCCCAGCCT CCTCGCTCAG ACTAGCCTTG CCACCCCTTA GTCAAAGCAA
  GCCTCACCTG AGTGCAGGAT GACAGTGACG GAGACATACA GGGACTTCCC CACCAGGGCG
  TCGGCGTTGG AAGGCCGTAC CCCCTCCATC AGCACCTTCC GGGTCAGCAC TGCATCCCCC
  ACACCATCCT CAATCTGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398573188	MGP_WTSI_17_57363642	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108799838					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573188	MGP_WTSI_17_57363642	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57531219 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	103 bp proximal
Tssr145377	transcription start site region 145377	1988 bp downstream
Tssr145378	transcription start site region 145378	1084 bp downstream
Tssr145379	transcription start site region 145379	1009 bp downstream
Tssr145380	transcription start site region 145380	964 bp downstream
Tssr145381	transcription start site region 145381	910 bp downstream
Tssr145382	transcription start site region 145382	356 bp downstream
Tssr145383	transcription start site region 145383	279 bp downstream
Tssr145384	transcription start site region 145384	109 bp downstream
Tssr145385	transcription start site region 145385	1030 bp upstream
Tssr145386	transcription start site region 145386	1806 bp upstream
Tssr148940	transcription start site region 148940	1946 bp upstream
Tssr148941	transcription start site region 148941	1873 bp upstream
Tssr148942	transcription start site region 148942	1373 bp upstream
Tssr148943	transcription start site region 148943	1333 bp upstream
Tssr148944	transcription start site region 148944	1319 bp upstream
Tssr148945	transcription start site region 148945	1282 bp upstream
Tssr148946	transcription start site region 148946	1270 bp upstream
Tssr148947	transcription start site region 148947	1020 bp upstream
Tssr148948	transcription start site region 148948	936 bp upstream
Tssr148949	transcription start site region 148949	880 bp upstream
Tssr148950	transcription start site region 148950	326 bp upstream
Tssr148951	transcription start site region 148951	297 bp upstream
Tssr148952	transcription start site region 148952	237 bp upstream
Tssr148953	transcription start site region 148953	56 bp upstream
Tssr148954	transcription start site region 148954	31 bp upstream
Tssr148955	transcription start site region 148955	100 bp downstream
Tssr148956	transcription start site region 148956	133 bp downstream
Tssr148957	transcription start site region 148957	661 bp downstream
Tssr148958	transcription start site region 148958	884 bp downstream
Tssr148959	transcription start site region 148959	1044 bp downstream
Tssr148960	transcription start site region 148960	1798 bp downstream
Tssr148961	transcription start site region 148961	1835 bp downstream
Tssr148962	transcription start site region 148962	1981 bp downstream