rs108800582 SNP Detail

Summary

• ID
  rs108800582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:39253250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTGGGA GGAAGGCAGG
  AATAATATGC ACCGAGAGTG TCTATATCCA CATCACATGC CTACTTCCTT ATTGCCCTCA
  ACCTACAGCT CTTGGAGTCC TCCAGAGTCT CAATTCCAAG GTAAGTTATA CAAAAGAAAG
  AGTGAAAAGG TGTGTTTGTG AAAATAAAAA CAGATTTGTA GGCAGCTAGA CTATCCGTTC
  R
  TGCTTTTTAG TATCTTCCTT TTCACATTTT TAAAAAAAAA AAAACAGAAT ATTCTAACTT
  TTATAGATCA AGCTAGTTAG ATCAGTGGTT ACATTTAAAA ATTTATCTAA ACTTAAGTTG
  TTTGGATTCC TCTCTTTCTT GTCGTTTCTC TCACTTCCTT CATCTCACTC CCTGAGAATG
  CTTTTTATCT CTCCTAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148902919	ENSMUSSNP4439941	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss324322202	CHEV_13_39161143	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108800582					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:39253250 () rs orientation: forward

Symbol	Name	Function Class
Gm60523	predicted gene, 60523	within coordinates
Rr388296	regulatory region 388296	39 bp upstream