rs108800900 SNP Detail

Summary

• ID
  rs108800900
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180075779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATCACGGTGG GAGGAGCTTG AAGCAGCTGT CAGTCACATC
  TCATTGACAG ACAGTCAGGG AGCAGGGACC GAGGAATGGA TGTAGCTGTT CCGGTTGTTC
  M
  TACACACACA CACACACACA CACACACACA CACACACACA CACACACACA GAGTCCGGAC
  TGTGCCACCC ACCATGAGCT TGTCTTCACA CCCCAGCTAA C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146378756	ENSMUSSNP5409982	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs108800900					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180075779 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1103	CpG island 1103			1928 bp proximal
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr372537	regulatory region 372537			1654 bp upstream
Rr424423	regulatory region 424423			75 bp distal
Rr424424	regulatory region 424424			within coordinates
Rr424425	regulatory region 424425			661 bp proximal
Rr424426	regulatory region 424426			1540 bp proximal