rs108803409 SNP Detail

Summary

• ID
  rs108803409
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88373389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GTGTAAAAGG GAGGAGATAG GGGCAAAAGA GGCGTCGTCG
  TTCCTCCTCC TTAAAGGAAC CTTCCCTCCT CAGCCCCAGC GCCGCCGCCG CCGCTGCCGC
  T
  GCTGCTGCTG CCGCTGCTGC TGCTGCTGCT GCTCCGTGGC AGGAGGAGCC ATTGACACCG
  CCGGAGCCTC TCCGCTCAAG CCCTGTCGGT CCCTCCCCGC C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146187229	ENSMUSSNP3891874	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108803409					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88373389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	within coordinates
Fbxo11	F-box protein 11	670 bp upstream
Rr333911	regulatory region 333911	1612 bp proximal
Rr340317	regulatory region 340317	within coordinates
Rr370332	regulatory region 370332	517 bp upstream
Rr405528	regulatory region 405528	138 bp upstream
Tssr146222	transcription start site region 146222	1160 bp downstream
Tssr146223	transcription start site region 146223	1132 bp downstream
Tssr149795	transcription start site region 149795	232 bp upstream
Tssr149796	transcription start site region 149796	130 bp upstream
Tssr149797	transcription start site region 149797	88 bp upstream
Tssr149798	transcription start site region 149798	21 bp downstream
Tssr149799	transcription start site region 149799	43 bp downstream