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rs108805489 SNP Detail
Summary
  • ID
    rs108805489
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:54791653 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TTGGTGAGAA AGCCCTGCAC ACTATCTGCT AGTTCTGTGG
    CCTACCCAAG GCCTTTAGCT AGTATATGCA GCTGCTACCT ACTACCCCGG ACCCCGGGAC
    R
    CATGCTAACA ATGAATCCCG GGCCAGCCAA GTGGCCTTAG GGGTGGTAAA CACACTTGCC
    CCACAGCTTA CAGCTGGAGT CACATCCATG TGGTGGAAG                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss137771108 ENSMUSSNP3959478 ENSEMBL ENSEMBL_Sanger f SNP G A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs108805489 SNP G A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:54791653 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr260899 regulatory region 260899 53 bp distal
Rr260900 regulatory region 260900 1548 bp proximal
Rr263772 regulatory region 263772 629 bp distal
Snx6 sorting nexin 6 1471 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory