rs108805489 SNP Detail

Summary

• ID
  rs108805489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:54791653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGTGAGAA AGCCCTGCAC ACTATCTGCT AGTTCTGTGG
  CCTACCCAAG GCCTTTAGCT AGTATATGCA GCTGCTACCT ACTACCCCGG ACCCCGGGAC
  R
  CATGCTAACA ATGAATCCCG GGCCAGCCAA GTGGCCTTAG GGGTGGTAAA CACACTTGCC
  CCACAGCTTA CAGCTGGAGT CACATCCATG TGGTGGAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137771108	ENSMUSSNP3959478	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108805489					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:54791653 () rs orientation: forward

Symbol	Name	Function Class
Rr260899	regulatory region 260899	53 bp distal
Rr260900	regulatory region 260900	1548 bp proximal
Rr263772	regulatory region 263772	629 bp distal
Snx6	sorting nexin 6	1471 bp downstream