rs108805634 SNP Detail

Summary

• ID
  rs108805634
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105291292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GCTTGTCTAA TCTAGTTTCA GCTCTCTACC CTGTGCCTTA
  CACTAGTCTC ACTGTAACTG CTCTGATGCC AGCTTCTCTA TTCTTGTTTC ATTACTCCCC
  M
  CCCCCTCTTG TGGGATTCAC ATGTGTATTC AGGAGGAGTC CTTTCCTGGC AGCTGCCGGT
  TCTGTGACTT CATTCCTAGT GTGGAGATGG GGAAGGAAGG A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145608839	ENSMUSSNP6211862	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108805634					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105291292 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	1669 bp upstream
Cpgi19541	CpG island 19541	864 bp distal
Gm22504	predicted gene, 22504	253 bp downstream
Gm45799	predicted gene 45799	within coordinates
Rr400513	regulatory region 400513	1537 bp downstream
Rr652794	regulatory region 652794	1780 bp distal
Rr652795	regulatory region 652795	1485 bp distal
Timm10b	translocase of inner mitochondrial membrane 10B	within coordinates
Tssr2358	transcription start site region 2358	1664 bp downstream
Tssr68382	transcription start site region 68382	1571 bp downstream
Tssr68383	transcription start site region 68383	1499 bp downstream
Tssr68384	transcription start site region 68384	1276 bp downstream
Tssr68385	transcription start site region 68385	1058 bp downstream
Tssr68386	transcription start site region 68386	1015 bp downstream
Tssr68387	transcription start site region 68387	252 bp upstream
Tssr68388	transcription start site region 68388	530 bp upstream
Tssr74083	transcription start site region 74083	1715 bp upstream