rs108806087 SNP Detail

Summary

• ID
  rs108806087
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:10431370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATAGTAAA TAAGTATCAC
  TGATGTCTTT GGAAGGTTAT TTTATTTCTA ATACACAAGG CAACTGTGTG CCGTATTTAT
  AGTGGTTATT CAAGAGTAGA GTAACCATGT CAAGTGAGCT AGCTCCTTTT CTACTATGCT
  TGGGATTCCA ATCTTTCAAT TAAAAACAAA ACACAAAAGA ATCACACAAA AAAGTCAAAA
  M
  AAAAAAAAAA AAAACAAAAA CAAAACAAAA CAAAAAAAAA AAACCCAAAC AAAACTACTA
  CTACTCAAAT AAGCATAAAT AATTTAAAAA TGGGTCCAAG GGCATATATA GGGCACAAGT
  TACAAATATG AAAGTGAGAA AAATGAAGAC TTGTTTCCAG TCACAGGTTA GTAAAAAAGG
  ATATCCAAGG AGCTGGACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130537831	NCBIM37_NT_039638_chr17_10405306	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108806087					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130537831	NCBIM37_NT_039638_chr17_10405306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:10431370 () rs orientation: forward

Symbol	Name	Function Class
Qki	quaking, KH domain containing RNA binding	within coordinates
Tssr146373	transcription start site region 146373	702 bp upstream
Tssr146374	transcription start site region 146374	386 bp upstream
Tssr146375	transcription start site region 146375	358 bp upstream
Tssr146376	transcription start site region 146376	271 bp upstream
Tssr146377	transcription start site region 146377	within coordinates
Tssr146378	transcription start site region 146378	717 bp downstream