rs108808461 SNP Detail

Summary

• ID
  rs108808461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:4231491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT CCATGCTTAA AAGGACTTCT
  R
  GGCTAAGTCC CCCTGGAAGC GAATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139175465	ENSMUSSNP4561842	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108808461					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:4231491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6187	CpG island 6187	within coordinates
Gm62505	predicted gene, 62505	within coordinates
Nr1d2	nuclear receptor subfamily 1, group D, member 2	within coordinates
Rr487195	regulatory region 487195	912 bp distal
Rr487196	regulatory region 487196	1014 bp distal
Rr487197	regulatory region 487197	within coordinates
Rr487198	regulatory region 487198	309 bp distal
Rr487199	regulatory region 487199	76 bp proximal
Tssr127524	transcription start site region 127524	747 bp downstream
Tssr127525	transcription start site region 127525	848 bp downstream