rs108808515 SNP Detail

Summary

• ID
  rs108808515
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115080692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCGCTT CACACACCTC
  CCCCTTTTCT CCTTCCCATC TTCTGTGTGC TTTATCTGGG GTCTTTGCAC TTTGCCATAA
  ACAAGCACTG TGATTTTGTT TTTATCTTAA TTGTGAAGGA AGAGAGATGA GAAAGATGGG
  TGCTGGTGGC GACAGGGGGG TGTTAATCAG GTGGTGGTCA GGGTTCTGAG GAAAGCAGCC
  M
  TCTTCTTCTT ATAGGTCTTT GTTTTCTTTT AAATATTTAA TTTTTGTGTG TACAAATGTA
  TGGAATTCAT ATATATGTGT ATATGTGTAT ATAAGCATGC ATATGTGTGT GTATATATAT
  ATATATACAT TTATACTCAA ATGCATAGGT GTGTCTATAT ACATATATGT ACATATATAT
  ACATATACAT GTATATATCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss132872500	ENSMUSSNP4684807	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs108808515					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115080692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	1899 bp distal
Rr459796	regulatory region 459796	1591 bp distal
Rr459797	regulatory region 459797	1256 bp distal
Rr459798	regulatory region 459798	832 bp distal
Rr459799	regulatory region 459799	240 bp distal
Tmem104	transmembrane protein 104	within coordinates
Tssr3729	transcription start site region 3729	1186 bp upstream
Tssr3730	transcription start site region 3730	239 bp downstream
Tssr111735	transcription start site region 111735	1998 bp upstream
Tssr111736	transcription start site region 111736	1092 bp upstream